J3_8EV7_004

3D structure

PDB id

8EV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EV7_004 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0625

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8EV7|1|1A|C|1344
8EV7|1|1A|G|1345
8EV7|1|1A|U|1346
8EV7|1|1A|A|1347
8EV7|1|1A|A|1348
8EV7|1|1A|G|1349
*
8EV7|1|1A|C|1671
8EV7|1|1A|G|1672
8EV7|1|1A|G|1673
*
8EV7|1|1A|U|1686
8EV7|1|1A|C|1687
8EV7|1|1A|A|1688
8EV7|1|1A|G|1689

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains