J3_8EV7_020

3D structure

PDB id

8EV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

8EV7|1|2A|G|686, 8EV7|1|2A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EV7_020 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0533

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8EV7|1|2A|C|683
8EV7|1|2A|G|684
8EV7|1|2A|A|685
8EV7|1|2A|G|686
8EV7|1|2A|C|687
8EV7|1|2A|U|688
8EV7|1|2A|A|689
*
8EV7|1|2A|U|773
8EV7|1|2A|A|774
8EV7|1|2A|G|775
*
8EV7|1|2A|C|791
8EV7|1|2A|G|792
8EV7|1|2A|A|793
8EV7|1|2A|G|794

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2