J3_8EV7_028

3D structure

PDB id

8EV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EV7_028 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0891

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8EV7|1|2a|C|936
8EV7|1|2a|A|937
8EV7|1|2a|A|938
8EV7|1|2a|G|939
*
8EV7|1|2a|C|1344
8EV7|1|2a|U|1345
8EV7|1|2a|A|1346
8EV7|1|2a|G|1347
8EV7|1|2a|U|1348
8EV7|1|2a|A|1349
8EV7|1|2a|A|1350
*
8EV7|1|2a|U|1372
8EV7|1|2a|G|1373
8EV7|1|2a|A|1374
8EV7|1|2a|A|1375
8EV7|1|2a|U|1376
8EV7|1|2a|A|1377
8EV7|1|2a|C|1378
8EV7|1|2a|G|1379

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2y

Transfer RNA; tRNA