J3_8EV7_040
3D structure
- PDB id
- 8EV7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.89 Å
Loop
- Sequence
- CGAAG*CGCCAGAGAG*CGUAG
- Length
- 20 nucleotides
- Bulged bases
- 8EV7|1|1A|G|345
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EV7_040 not in the Motif Atlas
- Homologous match to J3_9DFE_006
- Geometric discrepancy: 0.0574
- The information below is about J3_9DFE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8EV7|1|1A|C|321
8EV7|1|1A|G|322
8EV7|1|1A|A|323
8EV7|1|1A|A|324
8EV7|1|1A|G|325
*
8EV7|1|1A|C|340
8EV7|1|1A|G|341
8EV7|1|1A|C|342
8EV7|1|1A|C|343
8EV7|1|1A|A|344
8EV7|1|1A|G|345
8EV7|1|1A|A|346
8EV7|1|1A|G|347
8EV7|1|1A|A|348
8EV7|1|1A|G|349
*
8EV7|1|1A|C|361
8EV7|1|1A|G|362
8EV7|1|1A|U|363
8EV7|1|1A|A|364
8EV7|1|1A|G|365
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1F
- 50S ribosomal protein L4
- Chain 1Y
- 50S ribosomal protein L24
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