J3_8EV7_041
3D structure
- PDB id
- 8EV7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.89 Å
Loop
- Sequence
- GCGGGAC*GGCAG*CC
- Length
- 14 nucleotides
- Bulged bases
- 8EV7|1|1A|A|1430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EV7_041 not in the Motif Atlas
- Homologous match to J3_9DFE_012
- Geometric discrepancy: 0.0699
- The information below is about J3_9DFE_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8EV7|1|1A|G|1390
8EV7|1|1A|C|1391
8EV7|1|1A|G|1392
8EV7|1|1A|G|1393
8EV7|1|1A|G|1394
8EV7|1|1A|A|1395
8EV7|1|1A|C|1396
*
8EV7|1|1A|G|1427
8EV7|1|1A|G|1428
8EV7|1|1A|C|1429
8EV7|1|1A|A|1430
8EV7|1|1A|G|1431
*
8EV7|1|1A|C|1448
8EV7|1|1A|C|1449
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1X
- 50S ribosomal protein L23
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