J3_8EV7_059

3D structure

PDB id

8EV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

8EV7|1|2A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EV7_059 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0675

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8EV7|1|2A|C|297
8EV7|1|2A|G|298
8EV7|1|2A|A|299
8EV7|1|2A|A|300
8EV7|1|2A|G|301
*
8EV7|1|2A|C|316
8EV7|1|2A|G|317
8EV7|1|2A|C|318
8EV7|1|2A|C|319
8EV7|1|2A|A|320
8EV7|1|2A|G|321
8EV7|1|2A|A|322
8EV7|1|2A|G|323
8EV7|1|2A|A|324
8EV7|1|2A|G|325
*
8EV7|1|2A|C|337
8EV7|1|2A|G|338
8EV7|1|2A|U|339
8EV7|1|2A|A|340
8EV7|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24