J3_8EVP_014
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8EVP|1|B5|C|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EVP_014 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0708
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8EVP|1|B5|A|880
8EVP|1|B5|U|881
8EVP|1|B5|C|882
8EVP|1|B5|A|883
*
8EVP|1|B5|U|927
8EVP|1|B5|A|928
8EVP|1|B5|A|929
8EVP|1|B5|C|930
8EVP|1|B5|U|931
8EVP|1|B5|A|932
8EVP|1|B5|C|933
8EVP|1|B5|U|934
8EVP|1|B5|G|935
*
8EVP|1|B5|C|942
8EVP|1|B5|A|943
8EVP|1|B5|U|944
8EVP|1|B5|U|945
8EVP|1|B5|U|946
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain Ap
- 60S ribosomal protein L43-A
- Chain BB
- RPS1A isoform 1
- Chain BN
- 40S ribosomal protein S13
- Chain BO
- 40S ribosomal protein S14-A
- Chain Ba
- RPS26B isoform 1
Coloring options: