J3_8EVP_018
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 8EVP|1|B5|G|1807, 8EVP|1|B5|G|1809
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EVP_018 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0743
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8EVP|1|B5|C|1179
8EVP|1|B5|U|1180
8EVP|1|B5|U|1181
8EVP|1|B5|A|1182
8EVP|1|B5|A|1183
8EVP|1|B5|U|1184
8EVP|1|B5|U|1185
8EVP|1|B5|U|1186
*
8EVP|1|B5|G|1806
8EVP|1|B5|G|1807
8EVP|1|B5|G|1808
8EVP|1|B5|G|1809
8EVP|1|B5|A|1810
8EVP|1|B5|A|1811
8EVP|1|B5|A|1812
8EVP|1|B5|C|1813
8EVP|1|B5|U|1814
8EVP|1|B5|C|1815
8EVP|1|B5|A|1816
8EVP|1|B5|C|1817
*
8EVP|1|B5|G|2062
8EVP|1|B5|G|2063
8EVP|1|B5|C|2064
8EVP|1|B5|C|2065
8EVP|1|B5|G|2066
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BP
- RPS15 isoform 1
- Chain BS
- 40S ribosomal protein S18-A
- Chain BU
- RPS20 isoform 1
- Chain Bd
- RPS29A isoform 1
- Chain EC
- Internal ribosome entry site
Coloring options: