J3_8EVP_023

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CCAG*CAG*UGG

Length

10 nucleotides

Bulged bases

8EVP|1|EC|A|6896, 8EVP|1|EC|G|6935

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVP|1|EC|C|6894
8EVP|1|EC|C|6895
8EVP|1|EC|A|6896
8EVP|1|EC|G|6897
*
8EVP|1|EC|C|6917
8EVP|1|EC|A|6918
8EVP|1|EC|G|6919
*
8EVP|1|EC|U|6934
8EVP|1|EC|G|6935
8EVP|1|EC|G|6936

Current chains

Chain EC

Internal ribosome entry site

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain BP

RPS15 isoform 1