J3_8EVP_035

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CA*UAACUGAAU*AGGAAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVP|1|A1|C|1631
8EVP|1|A1|A|1632
*
8EVP|1|A1|U|1641
8EVP|1|A1|A|1642
8EVP|1|A1|A|1643
8EVP|1|A1|C|1644
8EVP|1|A1|U|1645
8EVP|1|A1|G|1646
8EVP|1|A1|A|1647
8EVP|1|A1|A|1648
8EVP|1|A1|U|1649
*
8EVP|1|A1|A|1806
8EVP|1|A1|G|1807
8EVP|1|A1|G|1808
8EVP|1|A1|A|1809
8EVP|1|A1|A|1810
8EVP|1|A1|G|1811

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain AZ

60S ribosomal protein L27-A

Chain Ag

60S ribosomal protein L34-A