J3_8EVP_043

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8EVP|1|B5|A|226, 8EVP|1|B5|U|227, 8EVP|1|B5|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVP|1|B5|A|213
8EVP|1|B5|G|214
8EVP|1|B5|A|215
8EVP|1|B5|U|216
8EVP|1|B5|A|217
8EVP|1|B5|A|218
8EVP|1|B5|A|219
8EVP|1|B5|A|220
8EVP|1|B5|A|221
8EVP|1|B5|A|222
8EVP|1|B5|U|223
8EVP|1|B5|C|224
8EVP|1|B5|A|225
8EVP|1|B5|A|226
8EVP|1|B5|U|227
8EVP|1|B5|G|228
*
8EVP|1|B5|C|237
8EVP|1|B5|U|238
8EVP|1|B5|C|239
8EVP|1|B5|U|240
8EVP|1|B5|U|241
8EVP|1|B5|U|242
8EVP|1|B5|G|243
*
8EVP|1|B5|C|250
8EVP|1|B5|A|251
8EVP|1|B5|U|252

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A

Chain BL

40S ribosomal protein S11-A