J3_8EVP_048

3D structure

PDB id

8EVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGACGG*CCGCUAAGG*CACC

Length

19 nucleotides

Bulged bases

8EVP|1|A1|C|1255

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EVP|1|A1|G|1229
8EVP|1|A1|G|1230
8EVP|1|A1|A|1231
8EVP|1|A1|C|1232
8EVP|1|A1|G|1233
8EVP|1|A1|G|1234
*
8EVP|1|A1|C|1254
8EVP|1|A1|C|1255
8EVP|1|A1|G|1256
8EVP|1|A1|C|1257
8EVP|1|A1|U|1258
8EVP|1|A1|A|1259
8EVP|1|A1|A|1260
8EVP|1|A1|G|1261
8EVP|1|A1|G|1262
*
8EVP|1|A1|C|1277
8EVP|1|A1|A|1278
8EVP|1|A1|C|1279
8EVP|1|A1|C|1280

Current chains

Chain A1

25S rRNA

Nearby chains