J3_8EVQ_004

3D structure

PDB id

8EVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EVQ_004 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2188

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8EVQ|1|A1|G|1230
8EVQ|1|A1|A|1231
8EVQ|1|A1|C|1232
*
8EVQ|1|A1|G|1256
8EVQ|1|A1|C|1257
8EVQ|1|A1|U|1258
8EVQ|1|A1|A|1259
8EVQ|1|A1|A|1260
8EVQ|1|A1|G|1261
8EVQ|1|A1|G|1262
*
8EVQ|1|A1|C|1277
8EVQ|1|A1|A|1278
8EVQ|1|A1|C|1279

Current chains

Chain A1

25S rRNA

Nearby chains

Chain V

60S acidic ribosomal protein P0