J3_8EVR_004

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EVR_004 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2091

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8EVR|1|A1|G|1230
8EVR|1|A1|A|1231
8EVR|1|A1|C|1232
*
8EVR|1|A1|G|1256
8EVR|1|A1|C|1257
8EVR|1|A1|U|1258
8EVR|1|A1|A|1259
8EVR|1|A1|A|1260
8EVR|1|A1|G|1261
8EVR|1|A1|G|1262
*
8EVR|1|A1|C|1277
8EVR|1|A1|A|1278
8EVR|1|A1|C|1279

Current chains

Chain A1

25S rRNA

Nearby chains

Chain V

60S acidic ribosomal protein P0