J3_8EVR_021

3D structure

PDB id

8EVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

AUGAAAAGAAC*GAGUGAAAAAGUACG*CU

Length

28 nucleotides

Bulged bases

8EVR|1|A1|A|398, 8EVR|1|A1|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EVR_021 not in the Motif Atlas

Homologous match to J3_8C3A_049

Geometric discrepancy: 0.0805

The information below is about J3_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91149.1

Basepair signature

cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8EVR|1|A1|A|369
8EVR|1|A1|U|370
8EVR|1|A1|G|371
8EVR|1|A1|A|372
8EVR|1|A1|A|373
8EVR|1|A1|A|374
8EVR|1|A1|A|375
8EVR|1|A1|G|376
8EVR|1|A1|A|377
8EVR|1|A1|A|378
8EVR|1|A1|C|379
*
8EVR|1|A1|G|390
8EVR|1|A1|A|391
8EVR|1|A1|G|392
8EVR|1|A1|U|393
8EVR|1|A1|G|394
8EVR|1|A1|A|395
8EVR|1|A1|A|396
8EVR|1|A1|A|397
8EVR|1|A1|A|398
8EVR|1|A1|A|399
8EVR|1|A1|G|400
8EVR|1|A1|U|401
8EVR|1|A1|A|402
8EVR|1|A1|C|403
8EVR|1|A1|G|404
*
8EVR|1|A4|C|19
8EVR|1|A4|U|20

Current chains

Chain A1

25S rRNA

Chain A4

5.8 S rRNA

Nearby chains

Chain AC

RPL4A isoform 1

Chain AP

60S ribosomal protein L17-A

Chain AY

60S ribosomal protein L26-A

Chain Al

60S ribosomal protein L39