J3_8EVR_034
3D structure
- PDB id
- 8EVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- AGAUUAAG*CGCGC(A2M)AAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 8EVR|1|B5|A|46, 8EVR|1|B5|A|47
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EVR_034 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.1036
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8EVR|1|B5|A|41
8EVR|1|B5|G|42
8EVR|1|B5|A|43
8EVR|1|B5|U|44
8EVR|1|B5|U|45
8EVR|1|B5|A|46
8EVR|1|B5|A|47
8EVR|1|B5|G|48
*
8EVR|1|B5|C|431
8EVR|1|B5|G|432
8EVR|1|B5|C|433
8EVR|1|B5|G|434
8EVR|1|B5|C|435
8EVR|1|B5|A2M|436
8EVR|1|B5|A|437
8EVR|1|B5|A|438
8EVR|1|B5|U|439
*
8EVR|1|B5|A|464
8EVR|1|B5|G|465
8EVR|1|B5|U|466
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BJ
- 40S ribosomal protein S9-A
- Chain BX
- 40S ribosomal protein S23-A
- Chain DC
- Elongation factor 2
Coloring options: