J3_8EVS_028
3D structure
- PDB id
- 8EVS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- AGACG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EVS_028 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.0667
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.1
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8EVS|1|A1|A|1654
8EVS|1|A1|G|1655
8EVS|1|A1|A|1656
8EVS|1|A1|C|1657
8EVS|1|A1|G|1658
*
8EVS|1|A1|C|1791
8EVS|1|A1|C|1792
*
8EVS|1|A1|G|1796
8EVS|1|A1|A|1797
8EVS|1|A1|A|1798
8EVS|1|A1|A|1799
8EVS|1|A1|A|1800
8EVS|1|A1|U|1801
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain Ag
- 60S ribosomal protein L34-A
- Chain Ap
- 60S ribosomal protein L43-A
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