J3_8EVS_034

3D structure

PDB id

8EVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*AGU

Length

20 nucleotides

Bulged bases

8EVS|1|B5|A|47

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EVS_034 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0659

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8EVS|1|B5|A|41
8EVS|1|B5|G|42
8EVS|1|B5|A|43
8EVS|1|B5|U|44
8EVS|1|B5|U|45
8EVS|1|B5|A|46
8EVS|1|B5|A|47
8EVS|1|B5|G|48
*
8EVS|1|B5|C|431
8EVS|1|B5|G|432
8EVS|1|B5|C|433
8EVS|1|B5|G|434
8EVS|1|B5|C|435
8EVS|1|B5|A2M|436
8EVS|1|B5|A|437
8EVS|1|B5|A|438
8EVS|1|B5|U|439
*
8EVS|1|B5|A|464
8EVS|1|B5|G|465
8EVS|1|B5|U|466

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A

Chain DC

Elongation factor 2