J3_8EVT_006
3D structure
- PDB id
- 8EVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EVT_006 not in the Motif Atlas
- Homologous match to J3_8C3A_008
- Geometric discrepancy: 0.1034
- The information below is about J3_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8EVT|1|A1|A|2432
8EVT|1|A1|U|2433
8EVT|1|A1|U|2434
8EVT|1|A1|G|2435
*
8EVT|1|A1|C|2512
8EVT|1|A1|U|2513
8EVT|1|A1|U|2514
8EVT|1|A1|A|2515
8EVT|1|A1|U|2516
8EVT|1|A1|U|2517
*
8EVT|1|A1|A|2590
8EVT|1|A1|A|2591
8EVT|1|A1|G|2592
8EVT|1|A1|A|2593
8EVT|1|A1|C|2594
8EVT|1|A1|A|2595
8EVT|1|A1|U|2596
8EVT|1|A1|U|2597
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AG
- 60S ribosomal protein L8-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Ai
- 60S ribosomal protein L36-A
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