J3_8EVT_024

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGAUGG*CGUUUCAAAGG*CCACCAU

Length

24 nucleotides

Bulged bases

8EVT|1|A1|C|1556, 8EVT|1|A1|A|1558, 8EVT|1|A1|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EVT_024 not in the Motif Atlas

Homologous match to J3_8C3A_053

Geometric discrepancy: 0.5713

The information below is about J3_8C3A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34234.1

Basepair signature

cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8EVT|1|A1|A|1537
8EVT|1|A1|G|1538
8EVT|1|A1|A|1539
8EVT|1|A1|U|1540
8EVT|1|A1|G|1541
8EVT|1|A1|G|1542
*
8EVT|1|A1|C|1551
8EVT|1|A1|G|1552
8EVT|1|A1|U|1553
8EVT|1|A1|U|1554
8EVT|1|A1|U|1555
8EVT|1|A1|C|1556
8EVT|1|A1|A|1557
8EVT|1|A1|A|1558
8EVT|1|A1|A|1559
8EVT|1|A1|G|1560
8EVT|1|A1|G|1561
*
8EVT|1|A1|C|1578
8EVT|1|A1|C|1579
8EVT|1|A1|A|1580
8EVT|1|A1|C|1581
8EVT|1|A1|C|1582
8EVT|1|A1|A|1583
8EVT|1|A1|U|1584

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AA

60S ribosomal protein L2-A

Chain AG

60S ribosomal protein L8-A

Chain AN

60S ribosomal protein L15-A

Chain AX

60S ribosomal protein L25

Chain Aj

60S ribosomal protein L37-A