J3_8EVT_026

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EVT_026 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0621

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8EVT|1|A1|A|1654
8EVT|1|A1|G|1655
8EVT|1|A1|A|1656
8EVT|1|A1|C|1657
8EVT|1|A1|G|1658
*
8EVT|1|A1|C|1791
8EVT|1|A1|C|1792
*
8EVT|1|A1|G|1796
8EVT|1|A1|A|1797
8EVT|1|A1|A|1798
8EVT|1|A1|A|1799
8EVT|1|A1|A|1800
8EVT|1|A1|U|1801

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain Ag

60S ribosomal protein L34-A

Chain Ap

60S ribosomal protein L43-A