J3_8EVT_032

3D structure

PDB id

8EVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*AGU

Length

20 nucleotides

Bulged bases

8EVT|1|B5|A|46, 8EVT|1|B5|A|47

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EVT_032 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0532

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8EVT|1|B5|A|41
8EVT|1|B5|G|42
8EVT|1|B5|A|43
8EVT|1|B5|U|44
8EVT|1|B5|U|45
8EVT|1|B5|A|46
8EVT|1|B5|A|47
8EVT|1|B5|G|48
*
8EVT|1|B5|C|431
8EVT|1|B5|G|432
8EVT|1|B5|C|433
8EVT|1|B5|G|434
8EVT|1|B5|C|435
8EVT|1|B5|A2M|436
8EVT|1|B5|A|437
8EVT|1|B5|A|438
8EVT|1|B5|U|439
*
8EVT|1|B5|A|464
8EVT|1|B5|G|465
8EVT|1|B5|U|466

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A