J3_8EWB_004

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

8EWB|1|A1|A|1259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EWB_004 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2104

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8EWB|1|A1|G|1230
8EWB|1|A1|A|1231
8EWB|1|A1|C|1232
*
8EWB|1|A1|G|1256
8EWB|1|A1|C|1257
8EWB|1|A1|U|1258
8EWB|1|A1|A|1259
8EWB|1|A1|A|1260
8EWB|1|A1|G|1261
8EWB|1|A1|G|1262
*
8EWB|1|A1|C|1277
8EWB|1|A1|A|1278
8EWB|1|A1|C|1279

Current chains

Chain A1

25S rRNA

Nearby chains

Chain V

60S acidic ribosomal protein P0