J3_8EWB_005
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- UGAAGUG*CAA*UCUA
- Length
- 14 nucleotides
- Bulged bases
- 8EWB|1|A1|A|1482
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EWB_005 not in the Motif Atlas
- Homologous match to J3_8C3A_006
- Geometric discrepancy: 0.0837
- The information below is about J3_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
8EWB|1|A1|U|1479
8EWB|1|A1|G|1480
8EWB|1|A1|A|1481
8EWB|1|A1|A|1482
8EWB|1|A1|G|1483
8EWB|1|A1|U|1484
8EWB|1|A1|G|1485
*
8EWB|1|A1|C|1857
8EWB|1|A1|A|1858
8EWB|1|A1|A|1859
*
8EWB|1|A1|U|1871
8EWB|1|A1|C|1872
8EWB|1|A1|U|1873
8EWB|1|A1|A|1874
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AR
- 60S ribosomal protein L19-A
- Chain Ag
- 60S ribosomal protein L34-A
Coloring options: