J3_8EWB_040

3D structure

PDB id

8EWB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

AG*CGC(A2M)AAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EWB_040 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.0824

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8EWB|1|B5|A|41
8EWB|1|B5|G|42
*
8EWB|1|B5|C|433
8EWB|1|B5|G|434
8EWB|1|B5|C|435
8EWB|1|B5|A2M|436
8EWB|1|B5|A|437
8EWB|1|B5|A|438
8EWB|1|B5|U|439
*
8EWB|1|B5|A|464
8EWB|1|B5|G|465
8EWB|1|B5|U|466

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A

Chain DC

Elongation factor 2