J3_8EWB_045
3D structure
- PDB id
- 8EWB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- UUCUUAG*CGAGAC*GCAAUAA
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EWB_045 not in the Motif Atlas
- Homologous match to J3_8C3A_042
- Geometric discrepancy: 0.2853
- The information below is about J3_8C3A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67213.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8EWB|1|B5|U|1282
8EWB|1|B5|U|1283
8EWB|1|B5|C|1284
8EWB|1|B5|U|1285
8EWB|1|B5|U|1286
8EWB|1|B5|A|1287
8EWB|1|B5|G|1288
*
8EWB|1|B5|C|1327
8EWB|1|B5|G|1328
8EWB|1|B5|A|1329
8EWB|1|B5|G|1330
8EWB|1|B5|A|1331
8EWB|1|B5|C|1332
*
8EWB|1|B5|G|1419
8EWB|1|B5|C|1420
8EWB|1|B5|A|1421
8EWB|1|B5|A|1422
8EWB|1|B5|U|1423
8EWB|1|B5|A|1424
8EWB|1|B5|A|1425
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BC
- RPS2 isoform 1
- Chain BD
- RPS3 isoform 1
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BR
- 40S ribosomal protein S17-A
- Chain BU
- RPS20 isoform 1
- Chain Bd
- RPS29A isoform 1
Coloring options: