J3_8EWC_005

3D structure

PDB id

8EWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.45 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8EWC|1|A1|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EWC_005 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0688

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8EWC|1|A1|U|1479
8EWC|1|A1|G|1480
8EWC|1|A1|A|1481
8EWC|1|A1|A|1482
8EWC|1|A1|G|1483
8EWC|1|A1|U|1484
8EWC|1|A1|G|1485
*
8EWC|1|A1|C|1857
8EWC|1|A1|A|1858
8EWC|1|A1|A|1859
*
8EWC|1|A1|U|1871
8EWC|1|A1|C|1872
8EWC|1|A1|U|1873
8EWC|1|A1|A|1874

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain Ag

60S ribosomal protein L34-A