J3_8EWC_022
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CACUG*CGUGCUGG*C(OMG)AG
- Length
- 17 nucleotides
- Bulged bases
- 8EWC|1|B5|U|1473, 8EWC|1|B5|G|1539
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8EWC_022 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.2383
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
8EWC|1|B5|C|1470
8EWC|1|B5|A|1471
8EWC|1|B5|C|1472
8EWC|1|B5|U|1473
8EWC|1|B5|G|1474
*
8EWC|1|B5|C|1533
8EWC|1|B5|G|1534
8EWC|1|B5|U|1535
8EWC|1|B5|G|1536
8EWC|1|B5|C|1537
8EWC|1|B5|U|1538
8EWC|1|B5|G|1539
8EWC|1|B5|G|1540
*
8EWC|1|B5|C|1571
8EWC|1|B5|OMG|1572
8EWC|1|B5|A|1573
8EWC|1|B5|G|1574
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BF
- Rps5p
- Chain BS
- 40S ribosomal protein S18-A
- Chain BT
- 40S ribosomal protein S19-A
- Chain BZ
- RPS25A isoform 1
- Chain EC
- internal ribosome entry site (IRES)
Coloring options: