J3_8EYQ_003

3D structure

PDB id

8EYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S_delta_ksgA_h44_inactive_conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCUA

Length

25 nucleotides

Bulged bases

8EYQ|1|A|A|975, 8EYQ|1|A|G|976, 8EYQ|1|A|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EYQ_003 not in the Motif Atlas

Homologous match to J3_5J7L_006

Geometric discrepancy: 0.1242

The information below is about J3_5J7L_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8EYQ|1|A|U|955
8EYQ|1|A|U|956
8EYQ|1|A|U|957
8EYQ|1|A|A|958
8EYQ|1|A|A|959
8EYQ|1|A|U|960
8EYQ|1|A|U|961
8EYQ|1|A|C|962
*
8EYQ|1|A|G|973
8EYQ|1|A|A|974
8EYQ|1|A|A|975
8EYQ|1|A|G|976
8EYQ|1|A|A|977
8EYQ|1|A|A|978
8EYQ|1|A|C|979
8EYQ|1|A|C|980
8EYQ|1|A|U|981
8EYQ|1|A|U|982
8EYQ|1|A|A|983
8EYQ|1|A|C|984
*
8EYQ|1|A|G|1221
8EYQ|1|A|G|1222
8EYQ|1|A|C|1223
8EYQ|1|A|U|1224
8EYQ|1|A|A|1225

Current chains

Chain A

16S_rRNA

Nearby chains

Chain J

30S ribosomal protein S10

Chain M

30S ribosomal protein S13

Chain N

30S ribosomal protein S14

Chain S

30S ribosomal protein S19