J3_8EYQ_016

3D structure

PDB id

8EYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S_delta_ksgA_h44_inactive_conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

8EYQ|1|A|U|1086, 8EYQ|1|A|A|1101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8EYQ_016 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.1922

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8EYQ|1|A|U|1073
8EYQ|1|A|G|1074
*
8EYQ|1|A|U|1083
8EYQ|1|A|G|1084
8EYQ|1|A|U|1085
8EYQ|1|A|U|1086
8EYQ|1|A|G|1087
*
8EYQ|1|A|C|1098
8EYQ|1|A|G|1099
8EYQ|1|A|C|1100
8EYQ|1|A|A|1101
8EYQ|1|A|A|1102

Current chains

Chain A

16S_rRNA

Nearby chains

Chain E

30S ribosomal protein S5