J3_8FC1_014
3D structure
- PDB id
- 8FC1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CUUG*CAG*CUUACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FC1_014 not in the Motif Atlas
- Homologous match to J3_4LFB_005
- Geometric discrepancy: 0.1538
- The information below is about J3_4LFB_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84394.1
- Basepair signature
- cWW-tWH-F-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8FC1|1|1a|C|990
8FC1|1|1a|U|991
8FC1|1|1a|U|992
8FC1|1|1a|G|993
*
8FC1|1|1a|C|1045
8FC1|1|1a|A|1046
8FC1|1|1a|G|1047
*
8FC1|1|1a|C|1210
8FC1|1|1a|U|1211
8FC1|1|1a|U|1212
8FC1|1|1a|A|1213
8FC1|1|1a|C|1214
8FC1|1|1a|G|1215
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1n
- 30S ribosomal protein S14 type Z
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