J3_8FC1_038
3D structure
- PDB id
- 8FC1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 8FC1|1|1A|U|448, 8FC1|1|1A|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FC1_038 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0363
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8FC1|1|1A|C|32
8FC1|1|1A|U|33
8FC1|1|1A|C|34
8FC1|1|1A|G|35
*
8FC1|1|1A|C|445
8FC1|1|1A|G|446
8FC1|1|1A|A|447
8FC1|1|1A|U|448
8FC1|1|1A|A|449
8FC1|1|1A|G|450
8FC1|1|1A|C|451
8FC1|1|1A|G|452
8FC1|1|1A|C|453
8FC1|1|1A|A|454
8FC1|1|1A|C|455
8FC1|1|1A|C|456
8FC1|1|1A|A|457
8FC1|1|1A|G|458
8FC1|1|1A|U|459
8FC1|1|1A|A|460
8FC1|1|1A|C|461
*
8FC1|1|1A|G|468
8FC1|1|1A|G|469
8FC1|1|1A|A|470
8FC1|1|1A|A|471
8FC1|1|1A|A|472
8FC1|1|1A|G|473
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 17
- 50S ribosomal protein L34
- Chain 1F
- 50S ribosomal protein L4
- Chain 1U
- 50S ribosomal protein L20
- Chain 1X
- 50S ribosomal protein L23
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