J3_8FC1_041
3D structure
- PDB id
- 8FC1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- CGAAG*CGCCAGAGAG*CGUAG
- Length
- 20 nucleotides
- Bulged bases
- 8FC1|1|1A|G|321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FC1_041 not in the Motif Atlas
- Homologous match to J3_9DFE_006
- Geometric discrepancy: 0.0365
- The information below is about J3_9DFE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8FC1|1|1A|C|297
8FC1|1|1A|G|298
8FC1|1|1A|A|299
8FC1|1|1A|A|300
8FC1|1|1A|G|301
*
8FC1|1|1A|C|316
8FC1|1|1A|G|317
8FC1|1|1A|C|318
8FC1|1|1A|C|319
8FC1|1|1A|A|320
8FC1|1|1A|G|321
8FC1|1|1A|A|322
8FC1|1|1A|G|323
8FC1|1|1A|A|324
8FC1|1|1A|G|325
*
8FC1|1|1A|C|337
8FC1|1|1A|G|338
8FC1|1|1A|U|339
8FC1|1|1A|A|340
8FC1|1|1A|G|341
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1F
- 50S ribosomal protein L4
- Chain 1Y
- 50S ribosomal protein L24
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