J3_8FC2_028

3D structure

PDB id

8FC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC2_028 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0789

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8FC2|1|2a|C|936
8FC2|1|2a|A|937
8FC2|1|2a|A|938
8FC2|1|2a|G|939
*
8FC2|1|2a|C|1344
8FC2|1|2a|U|1345
8FC2|1|2a|A|1346
8FC2|1|2a|G|1347
8FC2|1|2a|U|1348
8FC2|1|2a|A|1349
8FC2|1|2a|A|1350
*
8FC2|1|2a|U|1372
8FC2|1|2a|G|1373
8FC2|1|2a|A|1374
8FC2|1|2a|A|1375
8FC2|1|2a|U|1376
8FC2|1|2a|A|1377
8FC2|1|2a|C|1378
8FC2|1|2a|G|1379

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9