J3_8FC2_034

3D structure

PDB id

8FC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

8FC2|1|2a|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC2_034 not in the Motif Atlas

Homologous match to J3_4LFB_018

Geometric discrepancy: 0.1262

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FC2|1|2a|C|1116
8FC2|1|2a|G|1117
8FC2|1|2a|C|1118
*
8FC2|1|2a|G|1155
8FC2|1|2a|G|1156
8FC2|1|2a|A|1157
8FC2|1|2a|C|1158
8FC2|1|2a|U|1159
8FC2|1|2a|G|1160
8FC2|1|2a|C|1161
*
8FC2|1|2a|G|1175
8FC2|1|2a|A|1176
8FC2|1|2a|G|1177
8FC2|1|2a|G|1178
8FC2|1|2a|A|1179
8FC2|1|2a|A|1180
8FC2|1|2a|G|1181
8FC2|1|2a|G|1182
8FC2|1|2a|A|1183
8FC2|1|2a|G|1184

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2i

30S ribosomal protein S9

Chain 2n

30S ribosomal protein S14 type Z