J3_8FC2_056

3D structure

PDB id

8FC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

8FC2|1|2A|U|504, 8FC2|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC2_056 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0584

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8FC2|1|2A|G|30
8FC2|1|2A|C|31
*
8FC2|1|2A|G|474
8FC2|1|2A|U|475
8FC2|1|2A|G|476
8FC2|1|2A|A|477
8FC2|1|2A|A|478
8FC2|1|2A|A|479
8FC2|1|2A|A|480
8FC2|1|2A|G|481
8FC2|1|2A|A|482
8FC2|1|2A|A|483
8FC2|1|2A|C|484
*
8FC2|1|2A|G|496
8FC2|1|2A|A|497
8FC2|1|2A|G|498
8FC2|1|2A|U|499
8FC2|1|2A|G|500
8FC2|1|2A|A|501
8FC2|1|2A|A|502
8FC2|1|2A|A|503
8FC2|1|2A|U|504
8FC2|1|2A|A|505
8FC2|1|2A|G|506
8FC2|1|2A|A|507
8FC2|1|2A|G|508
8FC2|1|2A|C|509
8FC2|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24