J3_8FC3_040

3D structure

PDB id

8FC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

8FC3|1|1A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC3_040 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0494

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8FC3|1|1A|C|297
8FC3|1|1A|G|298
8FC3|1|1A|A|299
8FC3|1|1A|A|300
8FC3|1|1A|G|301
*
8FC3|1|1A|C|316
8FC3|1|1A|G|317
8FC3|1|1A|C|318
8FC3|1|1A|C|319
8FC3|1|1A|A|320
8FC3|1|1A|G|321
8FC3|1|1A|A|322
8FC3|1|1A|G|323
8FC3|1|1A|A|324
8FC3|1|1A|G|325
*
8FC3|1|1A|C|337
8FC3|1|1A|G|338
8FC3|1|1A|U|339
8FC3|1|1A|A|340
8FC3|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24