J3_8FC3_042

3D structure

PDB id

8FC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC3_042 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0639

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8FC3|1|1A|G|1424
8FC3|1|1A|G|1425
8FC3|1|1A|G|1426
8FC3|1|1A|A|1427
8FC3|1|1A|C|1428
8FC3|1|1A|G|1429
*
8FC3|1|1A|C|1564
8FC3|1|1A|C|1565
*
8FC3|1|1A|G|1568
8FC3|1|1A|A|1569
8FC3|1|1A|A|1570
8FC3|1|1A|A|1571
8FC3|1|1A|A|1572
8FC3|1|1A|G|1573
8FC3|1|1A|C|1574

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2