J3_8FC4_017
3D structure
- PDB id
- 8FC4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.45 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GACGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FC4_017 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.0762
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8FC4|1|1a|C|1063
8FC4|1|1a|G|1064
8FC4|1|1a|U|1065
8FC4|1|1a|C|1066
8FC4|1|1a|A|1067
8FC4|1|1a|G|1068
*
8FC4|1|1a|C|1107
8FC4|1|1a|G|1108
8FC4|1|1a|C|1109
8FC4|1|1a|A|1110
8FC4|1|1a|A|1111
8FC4|1|1a|C|1112
8FC4|1|1a|C|1113
*
8FC4|1|1a|G|1187
8FC4|1|1a|A|1188
8FC4|1|1a|C|1189
8FC4|1|1a|G|1190
8FC4|1|1a|A|1191
8FC4|1|1a|C|1192
8FC4|1|1a|G|1193
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1c
- 30S ribosomal protein S3
- Chain 1e
- 30S ribosomal protein S5
- Chain 1g
- 30S ribosomal protein S7
- Chain 1i
- 30S ribosomal protein S9
- Chain 1j
- 30S ribosomal protein S10
- Chain 1n
- 30S ribosomal protein S14 type Z
Coloring options: