J3_8FC5_001

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

8FC5|1|1A|G|686, 8FC5|1|1A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC5_001 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0277

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8FC5|1|1A|C|683
8FC5|1|1A|G|684
8FC5|1|1A|A|685
8FC5|1|1A|G|686
8FC5|1|1A|C|687
8FC5|1|1A|U|688
8FC5|1|1A|A|689
*
8FC5|1|1A|U|773
8FC5|1|1A|A|774
8FC5|1|1A|G|775
*
8FC5|1|1A|C|791
8FC5|1|1A|G|792
8FC5|1|1A|A|793
8FC5|1|1A|G|794

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2