J3_8FC5_022

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC5_022 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.05

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8FC5|1|2A|C|1298
8FC5|1|2A|G|1299
8FC5|1|2A|U|1300
8FC5|1|2A|A|1301
8FC5|1|2A|A|1302
8FC5|1|2A|G|1303
*
8FC5|1|2A|C|1625
8FC5|1|2A|G|1626
8FC5|1|2A|G|1627
*
8FC5|1|2A|U|1639
8FC5|1|2A|C|1640
8FC5|1|2A|A|1641
8FC5|1|2A|G|1642

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains