3D structure

PDB id
8FC5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.65 Å

Loop

Sequence
CGC*GGACUGC*GAGGAAGGAG
Length
20 nucleotides
Bulged bases
8FC5|1|2a|A|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8FC5_034 not in the Motif Atlas
Homologous match to J3_4LFB_018
Geometric discrepancy: 0.1279
The information below is about J3_4LFB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8FC5|1|2a|C|1116
8FC5|1|2a|G|1117
8FC5|1|2a|C|1118
*
8FC5|1|2a|G|1155
8FC5|1|2a|G|1156
8FC5|1|2a|A|1157
8FC5|1|2a|C|1158
8FC5|1|2a|U|1159
8FC5|1|2a|G|1160
8FC5|1|2a|C|1161
*
8FC5|1|2a|G|1175
8FC5|1|2a|A|1176
8FC5|1|2a|G|1177
8FC5|1|2a|G|1178
8FC5|1|2a|A|1179
8FC5|1|2a|A|1180
8FC5|1|2a|G|1181
8FC5|1|2a|G|1182
8FC5|1|2a|A|1183
8FC5|1|2a|G|1184

Current chains

Chain 2a
16S Ribosomal RNA

Nearby chains

Chain 2b
30S ribosomal protein S2
Chain 2i
30S ribosomal protein S9
Chain 2n
30S ribosomal protein S14 type Z

Coloring options:


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