J3_8FC5_041

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

8FC5|1|1A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC5_041 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0422

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8FC5|1|1A|C|297
8FC5|1|1A|G|298
8FC5|1|1A|A|299
8FC5|1|1A|A|300
8FC5|1|1A|G|301
*
8FC5|1|1A|C|316
8FC5|1|1A|G|317
8FC5|1|1A|C|318
8FC5|1|1A|C|319
8FC5|1|1A|A|320
8FC5|1|1A|G|321
8FC5|1|1A|A|322
8FC5|1|1A|G|323
8FC5|1|1A|A|324
8FC5|1|1A|G|325
*
8FC5|1|1A|C|337
8FC5|1|1A|G|338
8FC5|1|1A|U|339
8FC5|1|1A|A|340
8FC5|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24