J3_8FC6_052

3D structure

PDB id

8FC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8FC6|1|1a|U|1212, 8FC6|1|1a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FC6_052 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1393

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

8FC6|1|1a|C|990
8FC6|1|1a|U|991
8FC6|1|1a|U|992
8FC6|1|1a|G|993
8FC6|1|1a|A|994
8FC6|1|1a|C|995
8FC6|1|1a|A|996
8FC6|1|1a|U|997
*
8FC6|1|1a|A|1044
8FC6|1|1a|C|1045
8FC6|1|1a|A|1046
8FC6|1|1a|G|1047
*
8FC6|1|1a|C|1210
8FC6|1|1a|U|1211
8FC6|1|1a|U|1212
8FC6|1|1a|A|1213
8FC6|1|1a|C|1214
8FC6|1|1a|G|1215

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z