J3_8FIZ_018

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FIZ_018 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0852

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8FIZ|1|BA|C|2091
8FIZ|1|BA|U|2092
8FIZ|1|BA|G|2093
*
8FIZ|1|BA|C|2196
8FIZ|1|BA|U|2197
8FIZ|1|BA|A|2198
8FIZ|1|BA|A|2199
8FIZ|1|BA|C|2200
*
8FIZ|1|BA|G|2223
8FIZ|1|BA|G|2224
8FIZ|1|BA|A|2225
8FIZ|1|BA|C|2226
8FIZ|1|BA|A|2227
8FIZ|1|BA|G|2228

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L2

Chain BK

50S ribosomal protein L9

Chain DE

50S ribosomal protein L28