J3_8FIZ_021

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

8FIZ|1|BA|U|2833, 8FIZ|1|BA|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FIZ_021 not in the Motif Atlas

Homologous match to J3_5J7L_048

Geometric discrepancy: 0.153

The information below is about J3_5J7L_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64069.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8FIZ|1|BA|G|2812
8FIZ|1|BA|A|2813
8FIZ|1|BA|A|2814
8FIZ|1|BA|C|2815
*
8FIZ|1|BA|G|2831
8FIZ|1|BA|U|2832
8FIZ|1|BA|U|2833
8FIZ|1|BA|G|2834
8FIZ|1|BA|A|2835
8FIZ|1|BA|U|2836
*
8FIZ|1|BA|A|2882
8FIZ|1|BA|A|2883
8FIZ|1|BA|U|2884
8FIZ|1|BA|G|2885
8FIZ|1|BA|A|2886
8FIZ|1|BA|A|2887
8FIZ|1|BA|C|2888

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BM

50S ribosomal protein L32

Chain BV

50S ribosomal protein L17