J3_8FIZ_025

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

8FIZ|1|AA|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FIZ_025 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.1627

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8FIZ|1|AA|C|936
8FIZ|1|AA|A|937
8FIZ|1|AA|A|938
8FIZ|1|AA|G|939
*
8FIZ|1|AA|C|1344
8FIZ|1|AA|U|1345
8FIZ|1|AA|A|1346
8FIZ|1|AA|G|1347
8FIZ|1|AA|U|1348
8FIZ|1|AA|A|1349
8FIZ|1|AA|A|1350
*
8FIZ|1|AA|U|1372
8FIZ|1|AA|G|1373
8FIZ|1|AA|A|1374
8FIZ|1|AA|A|1375
8FIZ|1|AA|U|1376
8FIZ|1|AA|A|1377
8FIZ|1|AA|C|1378
8FIZ|1|AA|G|1379

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AK

30S ribosomal protein S9

Chain AL

30S ribosomal protein S7