J3_8FIZ_030

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAAAGAACC

Length

28 nucleotides

Bulged bases

8FIZ|1|BA|A|504, 8FIZ|1|BA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FIZ_030 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1353

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8FIZ|1|BA|G|30
8FIZ|1|BA|C|31
*
8FIZ|1|BA|G|474
8FIZ|1|BA|C|475
8FIZ|1|BA|G|476
8FIZ|1|BA|A|477
8FIZ|1|BA|A|478
8FIZ|1|BA|A|479
8FIZ|1|BA|A|480
8FIZ|1|BA|G|481
8FIZ|1|BA|A|482
8FIZ|1|BA|A|483
8FIZ|1|BA|C|484
*
8FIZ|1|BA|G|496
8FIZ|1|BA|A|497
8FIZ|1|BA|G|498
8FIZ|1|BA|U|499
8FIZ|1|BA|G|500
8FIZ|1|BA|A|501
8FIZ|1|BA|A|502
8FIZ|1|BA|A|503
8FIZ|1|BA|A|504
8FIZ|1|BA|A|505
8FIZ|1|BA|G|506
8FIZ|1|BA|A|507
8FIZ|1|BA|A|508
8FIZ|1|BA|C|509
8FIZ|1|BA|C|510

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BX

50S ribosomal protein L20

Chain BZ

50S ribosomal protein L22

Chain DB

50S ribosomal protein L24