J3_8FIZ_031
3D structure
- PDB id
- 8FIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 8FIZ|1|BA|U|34, 8FIZ|1|BA|U|448, 8FIZ|1|BA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FIZ_031 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0968
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
8FIZ|1|BA|C|32
8FIZ|1|BA|C|33
8FIZ|1|BA|U|34
8FIZ|1|BA|G|35
*
8FIZ|1|BA|C|445
8FIZ|1|BA|G|446
8FIZ|1|BA|A|447
8FIZ|1|BA|U|448
8FIZ|1|BA|A|449
8FIZ|1|BA|G|450
8FIZ|1|BA|U|451
8FIZ|1|BA|G|452
8FIZ|1|BA|A|453
8FIZ|1|BA|A|454
8FIZ|1|BA|C|455
8FIZ|1|BA|C|456
8FIZ|1|BA|A|457
8FIZ|1|BA|G|458
8FIZ|1|BA|U|459
8FIZ|1|BA|A|460
8FIZ|1|BA|C|461
*
8FIZ|1|BA|G|468
8FIZ|1|BA|G|469
8FIZ|1|BA|A|470
8FIZ|1|BA|A|471
8FIZ|1|BA|A|472
8FIZ|1|BA|G|473
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BF
- 50S ribosomal protein L4
- Chain BN
- 50S ribosomal protein L34
- Chain BX
- 50S ribosomal protein L20
- Chain DA
- 50S ribosomal protein L23
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