J3_8FIZ_032

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FIZ_032 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1075

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8FIZ|1|BA|G|1424
8FIZ|1|BA|G|1425
8FIZ|1|BA|G|1426
8FIZ|1|BA|A|1427
8FIZ|1|BA|C|1428
8FIZ|1|BA|G|1429
*
8FIZ|1|BA|C|1564
8FIZ|1|BA|C|1565
*
8FIZ|1|BA|G|1568
8FIZ|1|BA|A|1569
8FIZ|1|BA|A|1570
8FIZ|1|BA|A|1571
8FIZ|1|BA|A|1572
8FIZ|1|BA|G|1573
8FIZ|1|BA|C|1574

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L2